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BENT: Biomedical Entity Annotator
==================================

**BENT: Biomedical Entity Annotator**

Python Library for Named Entity Recognition (NER) and Linking (NEL) in the biomedical domain.

NER models are based on `PubMedBERT <https://arxiv.org/pdf/2007.15779.pdf>`__ and a post-processing rule-based module.
NEL model is a graph-based approach based on the Personalized PageRank algorithm and Information content.

`Python package <https://pypi.org/project/bent/>`__

`Github repository <https://github.com/lasigeBioTM/BENT>`__

.. toctree::
   :maxdepth: 3
   :caption: Contents:
   :titlesonly:
   
   install.rst
   usage.rst
   documentation.rst

Citation:
~~~~~~~~~

.. bibliography::

   Ruas2022

Indices and tables
==================

* :ref:`genindex`
* :ref:`search`